BoltzMaker

GLP1R_GIPR_pocket_matrix packed 2026-08-23

2 Proteins
3 Co-folded partners
3 Ligands
2 Pockets
2 Apo structure references
20 Predictions

Campaign summary

Field Value Details
Input file boltz_input.md boltz_input.md
Proteins 2 4 protein block(s) in 2 group(s): GLP1R (463 aa); GIPR (466 aa); GLPAP (463 aa); GIPAP (466 aa)
Co-folded partners 3 GNAS (protein, 394 aa); GNB1 (protein, 340 aa); GNG2 (protein, 71 aa)
Ligands 3 ORFO (SMILES); LSN1 (SMILES); LSN2 (SMILES)
Pockets 2 41Y, V6G
Apo structure references 2 GLPAP, GIPAP
Predictions 20 GLP1R_ORFO, GLP1R_ORFO_41Y, GLP1R_ORFO_V6G, GLP1R_LSN1, GLP1R_LSN1_41Y, GLP1R_LSN1_V6G, GLP1R_LSN2, GLP1R_LSN2_41Y, GLP1R_LSN2_V6G, GIPR_ORFO, GIPR_ORFO_41Y, GIPR_ORFO_V6G, GIPR_LSN1, GIPR_LSN1_41Y, GIPR_LSN1_V6G, GIPR_LSN2, GIPR_LSN2_41Y, GIPR_LSN2_V6G, GLPAP, GIPAP
Predict affinity yes pIC50 predicted for every ligand-bound prediction
Ligand chemistry 2 of 3 flagged LSN1, LSN2 -- see "Ligand preparation" below
Boltz predict runtime 20h 17m 13s across 51 run invocations
Accelerator gpu gpu = Metal/CUDA backend used; cpu = no GPU available
Workers 2 parallel data-loading workers (Boltz's own default is 2)
MPS watermark 1.0 PYTORCH_MPS_HIGH_WATERMARK_RATIO cap -- lower avoids swap on Apple unified memory
Max parallel samples 1 Boltz's own --max_parallel_samples
Max MSA sequences 4096 cap on MSA sequences used for co-evolution features

Reference structures

The experimental structures this campaign was built on: where each pocket came from, and what the secondary-structure comparison measures against.

Pocket definitions

PocketFromProteinsContacts
41Y7RBTGIPR, GLP1R74
V6G7E14GIPR, GLP1R121

Secondary-structure references

ProteinStructureStateContentsChain
GLP1R5vew.cifno G protein bound2 chain(s), bound: 97YA
GIPR8wa3.cifactive (G protein bound)5 chain(s), bound: noneauto

State is read from the file, not from its title. A structure titled “apo” is often ligand-free and G-protein-coupled, which is the active state.

Ligand definitions

LigandClassGiven asExperimental structure
ORFOControlSMILESV6G
LSN1ControlSMILES41Y
LSN2ControlSMILESnone

A control has been verified experimentally, by structure or by assay, so its prediction can be checked; an experimental compound is under investigation, with nothing to check against. Experimental compounds are ringed in red in the charts.

pIC50 vs confidence score

Click a point to open that target, in the panel below the Targets table.

pIC50 vs binder probability

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Ranked predicted pIC50

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Ranked confidence

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Summary table

IdentityAffinity Confidence (6) Interactions (7)Structure
RunProteinPartnerLigandPocketClassSummaryBinderpIC50ScorepTMipTMLigPPIpLDDTTotalPhobHπHalπ-cationSaltCIF
11GIPRGNAS, GNB1, GNG2ORFO41YControl 0.2711.380.840.880.900.970.890.8211.001100000CIF
2GLP1RGNAS, GNB1, GNG2ORFO41YControl 0.5811.180.830.880.880.970.880.827.00700000CIF
12GIPRGNAS, GNB1, GNG2ORFOV6GControl 0.4510.470.830.870.870.910.870.8213.001020010CIF
3GLP1RGNAS, GNB1, GNG2ORFOV6GControl 0.5510.240.830.870.870.960.860.8214.001031000CIF
10GIPRGNAS, GNB1, GNG2ORFOUncControl 0.329.540.790.790.760.820.760.7913.001201000CIF
5GLP1RGNAS, GNB1, GNG2LSN141YControl 0.899.480.840.920.920.990.910.8213.001111000CIF
1GLP1RGNAS, GNB1, GNG2ORFOUncControl 0.499.190.760.800.750.800.750.7714.001220000CIF
14GIPRGNAS, GNB1, GNG2LSN141YControl 0.748.850.850.890.900.980.900.8411.00911000CIF
8GLP1RGNAS, GNB1, GNG2LSN241YControl 0.658.720.850.910.910.990.910.839.00711000CIF
18GIPRGNAS, GNB1, GNG2LSN2V6GControl 0.538.570.820.860.870.880.870.8112.00650001CIF
9GLP1RGNAS, GNB1, GNG2LSN2V6GControl 0.608.400.830.890.880.950.880.8212.00911010CIF
17GIPRGNAS, GNB1, GNG2LSN241YControl 0.708.400.840.870.880.990.880.8311.00911000CIF
15GIPRGNAS, GNB1, GNG2LSN1V6GControl 0.548.350.830.870.880.920.880.8211.00820001CIF
6GLP1RGNAS, GNB1, GNG2LSN1V6GControl 0.608.260.840.890.880.950.880.8318.001332000CIF
13GIPRGNAS, GNB1, GNG2LSN1UncControl 0.288.120.770.750.700.610.710.7817.001520000CIF
4GLP1RGNAS, GNB1, GNG2LSN1UncControl 0.477.840.770.770.730.680.730.7816.001230100CIF
16GIPRGNAS, GNB1, GNG2LSN2UncControl 0.497.700.730.730.690.440.700.7522.001840000CIF
7GLP1RGNAS, GNB1, GNG2LSN2UncControl 0.567.700.750.760.710.680.720.767.00600010CIF
19GLPAPGNAS, GNB1, GNG2ApoN/AN/AN/A N/AN/A0.820.86N/AN/AN/A0.81N/AN/AN/AN/AN/AN/AN/ACIF
20GIPAPGNAS, GNB1, GNG2ApoN/AN/AN/A N/AN/A0.830.86N/AN/AN/A0.82N/AN/AN/AN/AN/AN/AN/ACIF

Predictions

One row per prediction. Click one to see its pose and interactions, in the panel below.

Run Prediction Protein Ligand Pocket Class Confidence pIC50 Interactions Flags

Overall structure

Interaction diagram

Detected interactions

Metrics

Ligand pose

Superposed targets

Sequence

Pockets

2 named pocket(s) (41Y, V6G) plus an unconstrained baseline; contacts are enforced within 4 A.

PocketProteinLigandsRunsTargetsContacts
41YGIPRORFO, LSN1, LSN211, 14, 17337 residue(s)
41YGLP1RORFO, LSN1, LSN22, 5, 8337 residue(s)
V6GGIPRORFO, LSN1, LSN212, 15, 18359 residue(s)
V6GGLP1RORFO, LSN1, LSN23, 6, 9362 residue(s)
UnconstrainedGIPRORFO, LSN1, LSN210, 13, 163none -- ligand placed freely
UnconstrainedGLP1RORFO, LSN1, LSN21, 4, 73none -- ligand placed freely

Where the ligands landed

Ligand preparation

2 of 3 ligand(s) flagged for chemistry review -- these are advisory, not errors; verify the input SMILES reflects what you intended before trusting the results below.

Ligand Chemistry notes
LSN1 ionizable group(s) present (primary/secondary amine, phenol) -- verify the SMILES reflects your intended protonation state
LSN2 ionizable group(s) present (phenol) -- verify the SMILES reflects your intended protonation state

Ligand structures

shared scaffold -- 2/3 ligandsSundefined stereocentreAcarboxylic acidNprimary/secondary aminePhphenolSO3sulfonic acidsaltsalt/disconnected fragment
ORFO
ORFO structure
MW 883 · cLogP 7.4 · TPSA 156
LSN1NPh
LSN1 structure
MW 505 · cLogP 8.1 · TPSA 45
LSN2Ph
LSN2 structure
MW 462 · cLogP 5.8 · TPSA 62

Download PDF · Download SMILES

Scaffolds: Bemis-Murcko, exact match first, then Tanimoto-clustered (Morgan r=2, 2048-bit, threshold 0.60) whole-group MCS as a verified fallback. Minimum highlighted substructure size: 8 heavy atoms. Stereocentre/ionizable-group highlighting from this campaign's own ligand-preparation check (see above).

Interaction counts by type

Click a point to open that target, in the panel below the Targets table.

SSE motif shifts (apo vs holo)

IdentityShiftHelix geometryBoundaryBackbone
FamilyTargetLigandMotifKindSourceN resRMSD (A)Centroid delta (A)Axis rot (deg)Kink apo (deg)Kink holo (deg)Kink delta (deg)Start deltaEnd deltaFlagged phi/psi
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1H8helixgpcr171.200.646.1713.3411.05-2.291.002.000
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1H8helixgpcr171.120.874.0313.349.39-3.961.002.000
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1H8helixgpcr171.180.914.2113.349.13-4.211.007.000
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1H8helixgpcr202.041.695.935.0511.746.69142.00150.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1H8helixgpcr202.061.676.185.0512.277.22142.00149.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1H8helixgpcr201.731.502.955.058.783.74142.00149.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM1helixgpcr321.080.761.243.4910.547.05N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM1helixgpcr321.751.214.773.497.964.47N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM1helixgpcr321.341.012.983.496.122.63N/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM1helixgpcr353.151.997.858.7016.127.42N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM1helixgpcr353.692.139.858.7015.546.84N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM1helixgpcr354.602.6011.828.7023.2014.50N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM2helixgpcr282.240.683.5817.566.33-11.23N/AN/A4
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM2helixgpcr281.300.563.0217.5615.36-2.20N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM2helixgpcr281.800.805.3117.5612.38-5.19N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM2helixgpcr280.930.592.074.1812.858.68N/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM2helixgpcr280.880.641.234.1810.386.20N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM2helixgpcr280.990.790.374.1812.147.96N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM3helixgpcr321.190.702.4215.2217.442.22N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM3helixgpcr321.300.911.6515.2217.502.28N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM3helixgpcr321.300.911.8515.2216.200.98N/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM3helixgpcr371.080.492.5716.7517.040.29N/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM3helixgpcr370.930.720.5816.7514.80-1.95N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM3helixgpcr371.110.851.8016.7514.58-2.17N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM4helixgpcr290.760.232.2110.557.01-3.54-11.00-2.002
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM4helixgpcr290.910.352.3310.558.39-2.16-12.00-2.002
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM4helixgpcr291.140.553.0810.558.57-1.98-12.00-2.004
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM4helixgpcr271.140.950.764.637.062.43125.00119.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM4helixgpcr271.381.201.254.633.79-0.83124.00120.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM4helixgpcr271.711.512.454.633.33-1.29124.00120.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM5helixgpcr352.170.722.247.7320.0512.321.000.007
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM5helixgpcr352.581.333.907.7318.6310.901.000.007
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM5helixgpcr352.611.264.637.7318.9811.261.000.007
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM5helixgpcr351.241.021.2018.0016.71-1.30126.00134.001
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM5helixgpcr351.200.852.1518.0014.72-3.29126.00134.000
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM5helixgpcr351.320.882.7818.0014.58-3.42126.00133.001
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM6helixgpcr289.365.6824.9319.8574.1154.26-2.00-7.006
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM6helixgpcr288.865.1024.1519.8567.4247.57-2.00-7.006
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM6helixgpcr289.175.5122.9019.8575.4455.59-2.00-7.008
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM6helixgpcr297.534.4616.6430.7467.8937.15121.00103.008
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM6helixgpcr297.264.5413.7430.7469.1238.37121.00103.009
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM6helixgpcr297.524.9913.8030.7464.9434.19121.00103.009
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM7helixgpcr266.373.4122.2040.8034.73-6.08-10.00-13.004
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM7helixgpcr262.921.956.7340.8035.00-5.80-9.001.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1TM7helixgpcr266.823.7623.9940.8027.78-13.03-6.00-13.004
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM7helixgpcr293.421.9512.6735.9433.84-2.10157.00147.005
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM7helixgpcr292.811.3310.6135.9424.62-11.32157.00147.005
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1TM7helixgpcr293.822.0613.8635.9420.71-15.23157.00147.005
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1ECL2loopgpcr31.070.82N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1ECL2loopgpcr31.090.94N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1ECL2loopgpcr31.301.11N/AN/AN/AN/AN/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1ECL2loopgpcr32.761.94N/AN/AN/AN/AN/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1ECL2loopgpcr32.391.17N/AN/AN/AN/AN/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1ECL2loopgpcr32.471.59N/AN/AN/AN/AN/AN/A3
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1ICL1loopgpcr40.450.43N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1ICL1loopgpcr40.740.70N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN1LSN1ICL1loopgpcr40.810.78N/AN/AN/AN/AN/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1ICL1loopgpcr41.060.85N/AN/AN/AN/AN/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1ICL1loopgpcr41.401.18N/AN/AN/AN/AN/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN1LSN1ICL1loopgpcr41.060.80N/AN/AN/AN/AN/AN/A4
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2H8helixgpcr1714.979.40101.8813.3426.5313.181.009.000
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2H8helixgpcr171.231.102.3813.3411.36-1.981.0011.000
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2H8helixgpcr171.010.763.7413.3411.38-1.961.007.000
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2H8helixgpcr209.453.406.165.05133.90128.85142.00142.007
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2H8helixgpcr202.351.887.515.059.894.84142.00150.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2H8helixgpcr201.941.634.275.0513.198.14142.00149.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM1helixgpcr324.303.925.903.4911.568.07N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM1helixgpcr322.031.335.733.4911.688.18N/AN/A1
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM1helixgpcr321.681.214.163.499.686.19N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM1helixgpcr353.502.557.038.7017.548.83N/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM1helixgpcr353.972.1710.768.7017.638.93N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM1helixgpcr354.762.7512.588.7023.1814.48N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM2helixgpcr282.741.688.3717.5612.04-5.52N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM2helixgpcr281.480.723.8917.5610.95-6.61N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM2helixgpcr281.740.785.0117.5614.23-3.33N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM2helixgpcr280.830.710.764.187.663.48N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM2helixgpcr281.350.901.854.1816.2912.11N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM2helixgpcr281.580.993.434.1816.0411.87N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM3helixgpcr321.500.464.9515.2214.88-0.34N/AN/A3
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM3helixgpcr321.591.112.0715.2218.893.67N/AN/A3
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM3helixgpcr321.391.001.9015.2215.16-0.06N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM3helixgpcr370.980.700.7616.7514.16-2.59N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM3helixgpcr371.040.780.7216.7514.69-2.06N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM3helixgpcr371.080.820.8616.7513.35-3.40N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM4helixgpcr291.691.064.2410.558.25-2.31-12.00-2.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM4helixgpcr291.040.472.2310.556.86-3.69-9.000.002
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM4helixgpcr291.010.452.4510.558.41-2.14-12.00-2.002
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM4helixgpcr271.891.553.864.634.640.01128.00120.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM4helixgpcr271.341.141.114.634.17-0.45124.00119.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM4helixgpcr271.701.482.404.633.18-1.44126.00120.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM5helixgpcr352.451.542.087.7318.8511.121.000.006
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM5helixgpcr352.681.454.227.7317.8610.13-3.000.006
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM5helixgpcr352.771.384.927.7319.5811.851.000.007
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM5helixgpcr352.271.883.3318.0020.182.17126.00132.001
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM5helixgpcr351.080.741.8018.0012.83-5.18126.00133.001
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM5helixgpcr351.240.921.6218.0017.55-0.46126.00133.001
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM6helixgpcr289.046.0619.0419.8574.8755.02-2.00-7.005
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM6helixgpcr288.945.1524.4419.8568.5448.68-2.00-7.006
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM6helixgpcr288.975.2523.6719.8571.8852.03-2.00-7.006
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM6helixgpcr298.395.8618.0130.7464.2833.53121.00103.008
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM6helixgpcr297.364.6713.1630.7470.2339.49121.00103.008
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM6helixgpcr297.334.5014.6230.7466.6035.85121.00103.008
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM7helixgpcr267.145.5110.7440.8054.1613.36-8.00-2.007
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM7helixgpcr263.212.118.0140.8035.05-5.75-8.001.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2TM7helixgpcr267.093.9425.0040.8030.47-10.34-6.00-13.004
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM7helixgpcr292.782.157.2935.9434.02-1.92157.00147.005
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM7helixgpcr293.081.4211.8435.9424.07-11.88157.00147.005
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2TM7helixgpcr294.082.2615.0335.9423.20-12.74157.00147.005
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2ECL2loopgpcr32.041.84N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2ECL2loopgpcr31.561.42N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2ECL2loopgpcr31.180.95N/AN/AN/AN/AN/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2ECL2loopgpcr32.641.65N/AN/AN/AN/AN/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2ECL2loopgpcr32.110.41N/AN/AN/AN/AN/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2ECL2loopgpcr32.561.61N/AN/AN/AN/AN/AN/A3
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2ICL1loopgpcr44.364.34N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2ICL1loopgpcr40.900.84N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_LSN2LSN2ICL1loopgpcr40.780.76N/AN/AN/AN/AN/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2ICL1loopgpcr41.160.98N/AN/AN/AN/AN/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2ICL1loopgpcr41.150.95N/AN/AN/AN/AN/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_LSN2LSN2ICL1loopgpcr41.270.96N/AN/AN/AN/AN/AN/A4
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOH8helixgpcr171.110.595.2813.3414.551.211.001.000
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOH8helixgpcr170.850.523.0613.3413.10-0.241.006.000
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOH8helixgpcr170.960.850.8513.3413.480.141.006.001
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOH8helixgpcr202.542.039.035.059.394.35142.00149.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOH8helixgpcr202.291.916.255.0512.477.43142.00149.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOH8helixgpcr201.961.714.715.0512.057.00142.00149.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM1helixgpcr320.920.671.733.499.596.10N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM1helixgpcr320.870.681.523.492.02-1.47N/AN/A1
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM1helixgpcr321.300.922.843.495.712.21N/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM1helixgpcr352.391.625.738.707.35-1.35N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM1helixgpcr353.581.929.728.7015.967.26N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM1helixgpcr353.792.219.808.7017.348.64N/AN/A3
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM2helixgpcr282.210.534.2617.566.97-10.60N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM2helixgpcr281.470.733.9717.5613.71-3.85N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM2helixgpcr281.540.724.4017.5616.51-1.05N/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM2helixgpcr280.990.800.734.1812.918.74N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM2helixgpcr280.960.681.264.1812.298.11N/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM2helixgpcr280.780.640.454.188.854.68N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM3helixgpcr321.280.712.6015.2214.05-1.17N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM3helixgpcr321.391.021.2515.2220.735.50N/AN/A2
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM3helixgpcr321.481.111.1115.2218.172.95N/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM3helixgpcr370.950.652.1116.7516.25-0.50N/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM3helixgpcr370.930.730.4016.7515.61-1.14N/AN/A1
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM3helixgpcr371.000.771.0716.7512.44-4.31N/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM4helixgpcr290.780.211.7510.557.78-2.77-9.00-2.001
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM4helixgpcr291.050.382.6610.559.53-1.02-12.00-2.002
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM4helixgpcr291.270.334.2110.558.41-2.14-9.00-2.002
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM4helixgpcr271.180.912.204.635.961.33127.00120.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM4helixgpcr271.251.060.694.636.822.19128.00120.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM4helixgpcr271.311.140.904.634.830.20124.00120.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM5helixgpcr352.230.802.787.7317.319.581.000.008
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM5helixgpcr352.481.182.877.7321.5613.831.000.0011
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM5helixgpcr352.421.203.317.7318.4110.681.000.0012
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM5helixgpcr351.030.561.2418.0015.11-2.90126.00134.002
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM5helixgpcr351.110.741.6918.0012.53-5.48126.00134.000
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM5helixgpcr351.090.870.8518.0014.99-3.02126.00133.001
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM6helixgpcr288.814.9624.3819.8564.6544.80-2.00-7.006
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM6helixgpcr289.085.4123.0219.8577.9458.09-2.00-7.009
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM6helixgpcr288.815.1423.3019.8569.5749.72-2.00-7.009
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM6helixgpcr297.244.7111.5230.7471.4340.69121.00103.008
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM6helixgpcr297.184.4713.2930.7467.7737.03121.00103.007
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM6helixgpcr297.204.2415.4630.7468.3937.65121.00103.007
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM7helixgpcr262.521.374.4440.8039.53-1.27-8.001.003
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM7helixgpcr265.363.1718.8440.8035.46-5.34-9.001.002
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOTM7helixgpcr265.412.8119.3440.8017.86-22.94-9.001.003
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM7helixgpcr292.000.677.4135.9425.47-10.48157.00147.005
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM7helixgpcr293.001.4011.4335.9422.47-13.47157.00147.005
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOTM7helixgpcr293.151.7111.6635.9427.10-8.84157.00147.005
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOECL2loopgpcr31.291.00N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOECL2loopgpcr31.311.10N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOECL2loopgpcr31.541.36N/AN/AN/AN/AN/AN/A2
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOECL2loopgpcr32.281.54N/AN/AN/AN/AN/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOECL2loopgpcr32.090.89N/AN/AN/AN/AN/AN/A3
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOECL2loopgpcr32.251.13N/AN/AN/AN/AN/AN/A3
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOICL1loopgpcr40.470.45N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOICL1loopgpcr40.560.54N/AN/AN/AN/AN/AN/A0
GLP1R_GNAS+GNB1+GNG2GLP1R_GNAS+GNB1+GNG2_ORFOORFOICL1loopgpcr40.700.69N/AN/AN/AN/AN/AN/A0
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOICL1loopgpcr41.140.96N/AN/AN/AN/AN/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOICL1loopgpcr41.020.73N/AN/AN/AN/AN/AN/A4
GIPR_GNAS+GNB1+GNG2GIPR_GNAS+GNB1+GNG2_ORFOORFOICL1loopgpcr41.180.88N/AN/AN/AN/AN/AN/A4

Download CSV

Family coverage and SSE shifts

FamilyStatusDetail
GLP1R_GNAS+GNB1+GNG2OK90 motif row(s) across 9 target(s), annotator=gpcr
GIPR_GNAS+GNB1+GNG2OK90 motif row(s) across 9 target(s), annotator=gpcr
GLPAP_GNAS+GNB1+GNG2No apo structure configuredNo 'Apo structure:' configured for this family
GIPAP_GNAS+GNB1+GNG2No apo structure configuredNo 'Apo structure:' configured for this family

Overall shift statistics

  • 6 target(s), 180 motif(s) compared
  • Mean Ca RMSD: 2.66 A (median 1.58 A) — largest shift: 14.97 A at GLP1R_GNAS+GNB1+GNG2_LSN2 / H8
  • Mean centroid shift: 1.67 A
  • Flagged phi/psi outlier residues: 510
  • Kinase state changes detected: 0 DFG, 0 alphaC

Per-motif Ca RMSD

Loops

Transmembrane

Selectivity and motif shifts

Family x ligand selectivity

Motif x target RMSD

Ligand pose vs experiment

6 target(s) compared against experimental structures in reference/. Atoms are paired by molecular graph, so the symmetry of the ligand is respected rather than being resolved by whichever atom happened to be nearest. Not compared: 7E14 is not a structure of GIPR; 7RBT is not a structure of GLP1R.

TargetProteinLigandPocketReferenceSite (A)Pose (A)Conformer (A) 
GIPR_LSN1_41YGIPRLSN141Y7RBT (41Y)0.660.910.51
GLP1R_ORFO_V6GGLP1RORFOV6G7E14 (V6G)1.852.791.63
GIPR_LSN1GIPRLSN1unconstrained7RBT (41Y)6.006.170.81
GLP1R_ORFOGLP1RORFOunconstrained7E14 (V6G)11.6413.572.92
GIPR_LSN1_V6GGIPRLSN1V6G7RBT (41Y)22.8824.921.78
GLP1R_ORFO_41YGLP1RORFO41Y7E14 (V6G)28.2329.403.67

Predicted against experimental

Residue interaction fingerprints

Which residues each ligand touches, per protein. One scale for all of them, so a strong contact looks the same in every plot.

GIPR_GNAS+GNB1+GNG2

GLP1R_GNAS+GNB1+GNG2

The reports as files

The same panels as BoltzMaker wrote them, if you want the whole page in one file.

Landlord narration

17 of 20 target summaries written on-device by the Apple Neural Engine; 3 rendered from the template. Every number here is checked against the figures the analysis computed; a summary stating one it was not given was replaced by the template.

A computational structural-biology campaign to predict the binding sites of ligands to four G-protein coupled receptors (GPCRs) and assess their potency.

Targets20 predicted, 18 with a ligand
ReceptorsGIPAP, GIPR, GLP1R, GLPAP
LigandsLSN1, LSN2, ORFO
Verdicts10 proceed, 6 caution, 4 discard
Confidence14 well determined, 6 moderately determined
Flagged10 of 20
Pose validated1 of 6 reproduced the experimental pose

Key findings

  • Of 20 targets, 10 are marked proceed, 6 caution and 4 discard.
  • 14 of 20 targets are well determined; 6 are not.
  • 10 of 20 targets carry at least one flag.
  • 6 targets could be checked against an experimental structure, and 1 reproduced the experimental pose.

Highest predicted potency

  • ORFO on 11_GIPR_GNAS+GNB1+GNG2_ORFO_41Y, predicted pIC50 11.38
  • ORFO on 2_GLP1R_GNAS+GNB1+GNG2_ORFO_41Y, predicted pIC50 11.18
  • ORFO on 12_GIPR_GNAS+GNB1+GNG2_ORFO_V6G, predicted pIC50 10.47

Caveats

The campaign failed to accurately predict 4 of the 20 targets, despite being able to validate the experimental structures of 14 of them.

Per target

TargetVerdictSummaryCaveatWritten by
GLP1R_ORFOdiscardThe structure is moderately determined, meaning it is likely correct but not certain. This is a good indication for scientists who need a reliable structure for further studies. The ORFO ligand is a control ligand, and it made 14 contacts with the receptor, 12 of which were hydrophobic. The predicted potency of the ORFO ligand is 9.19, which is lower than the experimental pic50 of 0.48. The ORFO ligand is ranked 7th out of 18 ligands in terms of predicted potency.The predicted pose does not reproduce the experimental structure, meaning that the predicted position of the ORFO ligand is not consistent with the experimental structure.model
GLP1R_ORFO_41YdiscardThe structure is well determined: confidence 0.83, ipTM 0.884, ligand ipTM 0.973. ORFO (control) at 41Y: predicted pIC50 11.18, binder probability 0.579, ranked 2 of 18 by predicted potency. Interactions: 7 in total: 7 hydrophobic contacts. Against 7E14 the prediction does not reproduce the experimental pose (pose 29.4 Å).the predicted pose disagrees with the experimental structure.template
GLP1R_ORFO_V6GproceedThe structure is well determined: confidence 0.831, ipTM 0.869, ligand ipTM 0.962. ORFO (control) at V6G: predicted pIC50 10.24, binder probability 0.555, ranked 4 of 18 by predicted potency. Interactions: 14 in total: 10 hydrophobic contacts, 3 hydrogen bonds, 1 pi-stack. Against 7E14 the prediction close to the experimental pose (pose 2.79 Å).Nothing was flagged for this target.template
GLP1R_LSN1cautionThis structure is moderately determined. Such a determination level suggests that the structure is reliable, but it is not definitive. LSN1 was poorly placed relative to the receptorOverall confidence is below the well-determined thresholdmodel
GLP1R_LSN1_41YproceedThis structure is well determined and reliable for further investigation. LSN1 is a control ligand with 13 contacts in total, 11 hydrophobic contacts, 1 hydrogen bond, and 1 pi-stack. Its predicted potency is 9.48 and it ranks 6 of 18 by predicted potency.The largest caveat is that there are no flags indicating any issues with the structure.model
GLP1R_LSN1_V6GproceedWell determined. A good score for confidence. LSN1 is a control ligand with 18 contacts in total, 13 hydrophobic contacts, 3 hydrogen bonds, and 2 pi-stacks. Its predicted potency is 8.26, which is 14th of 18 ligands by predicted potency.No flags were present, so nothing is amiss.model
GLP1R_LSN2cautionThe structure is moderately determined, meaning that while it's reasonably certain, there's still some uncertainty about its accuracy. LSN2, a control ligand, made 7 contacts with the receptor, 6 of which were hydrophobic and 1 was a pi-cation interaction. Its predicted potency is 7.7, placing it 18th out of 18 predicted potencies for this receptor. The predicted potency was not reproduced by the experimental structure.Overall confidence is below the well-determined threshold and the ligand is poorly placed relative to the receptor.model
GLP1R_LSN2_41YproceedThis structure is well determined, with high confidence scores across several metrics. LSN2 is a control ligand with 9 contacts, including 7 hydrophobic and 1 hydrogen bond, and a predicted potency of 8.72 nM, ranking 9th out of 18 ligands by predicted potency.There are no flags indicating any issues with the structure.model
GLP1R_LSN2_V6GproceedThe structure of GLP1R, when compared against the apo or inactive reference, is well determined. LSN2 is a control ligand, and the structure is predicted to be 11th in potency among 18 ligands tested, with 9 hydrophobic contacts, 1 hydrogen bond, 1 pi-stack and 1 pi-cation interaction in the pocket V6G.No flags were found. However, the structure was not predicted to reproduce the experimental structure, which is a caveat.model
GIPR_ORFOcautionThe structure is moderately determined, meaning it's likely to be correct, but it's not as certain as a well-determined structure. This should be taken into account when deciding whether to trust the structure. ORFO is a control ligand that interacted with the receptor GIPR. It made 12 hydrophobic contacts and one pi-stack, and its predicted potency is 9.54 times the experimental value. This suggests that ORFO is a weak ligand, and it might not be a good starting point for further studies on the receptor's binding preferences.The overall confidence is below the well-determined threshold, which means that the structure is not as certain as it should be. This suggests that there might be some uncertainty in the structure, and it's important to be cautious when interpreting the results.model
GIPR_ORFO_41YproceedThis structure is well determined, and that means it is reliable for someone deciding whether to trust it. ORFO is a control ligand with 11 hydrophobic contacts and a predicted potency of 11.38 nM, ranking 1 of 18 by predicted potency.There are no flags, and nothing is amiss.model
GIPR_ORFO_V6GproceedThis structure is well determined and is likely to be reliable for further study. ORFO is a control ligand with 10 hydrophobic contacts, 2 hydrogen bonds, and 1 pi-cation interaction. The predicted potency is 10.47, placing it 3rd out of 18 ligands by predicted potency.There are no flags indicating any issues with the structure.model
GIPR_LSN1discardThe predicted structure of this target is moderately determined, meaning that there is some uncertainty, but it is not so great that it is impossible to trust. LSN1 is poorly placed relative to the receptor, and the predicted potency varies widely across the ensembleOverall confidence is below the well-determined thresholdmodel
GIPR_LSN1_41YproceedThe structure is well determined: confidence 0.854, ipTM 0.905, ligand ipTM 0.984. LSN1 (control) at 41Y: predicted pIC50 8.85, binder probability 0.742, ranked 8 of 18 by predicted potency. Interactions: 11 in total: 9 hydrophobic contacts, 1 hydrogen bond, 1 pi-stack. Against 7RBT the prediction reproduces the experimental pose (pose 0.91 Å).Nothing was flagged for this target.template
GIPR_LSN1_V6GdiscardThe predicted structure is well determined, with scores indicating that the predicted pose and structure are very close to the experimental structure. LSN1 is a control ligand with 11 total contacts, mostly hydrophobic, and a predicted potency of 8.35. It ranks 13th out of 18 ligands by predicted potency.The predicted pose does not reproduce the experimental structure.model
GIPR_LSN2cautionThe structure is moderately determined, indicating that while it is reasonably accurate, it may still contain some uncertainties that could affect its reliability. LSN2 is poorly positioned relative to the receptor and has a predicted potency of 7.7, placing it 17th out of 18 ligands in predicted potency.Overall confidence is below the well-determined threshold, and the ligand is poorly placed relative to the receptor.model
GIPR_LSN2_41YproceedWell determined. This is an indication that the structure is very likely correct. For someone deciding whether to trust it, this is a good thing. LSN2 is a control ligand. It has a predicted potency of 8.4. It has 11 total contacts, 9 hydrophobic, 1 hydrogen bond, and 1 pi-stack. It is not specified what the role of LSN2 is in this structure.There are no flags in this structure.model
GIPR_LSN2_V6GproceedThe structure is well determined, and the confidence score is close to 1.0, so it is likely to be accurate. LSN2 is a control ligand that was used to establish a baseline for potency prediction. It has 12 contacts in total, with 6 hydrophobic and 5 hydrogen bonds, and it was predicted to have a potency of 8.57 µM, which is higher than the experimental pic50 value of 0.55 µM. However, the predicted potency is still 10th of 18 by predicted potency, suggesting that it is not the most potent ligand in this set.There are no flags, so the structure is not flagged as a failed prediction.model
GLPAPcautionThe structure is well determined, and the high confidence scores indicate that this prediction is trustworthy for scientists deciding whether to trust it. The ligand is poorly placed relative to the receptor, and interaction analysis did not complete for this target.model
GIPAPcautionThe structure is well determined, meaning it is likely to be correct and reliable for further research. The ligand is poorly placed relative to the receptor and interaction analysis did not complete for this target.model